Add toml package and update configuration parsing in Dokploy

- Added toml package version 3.0.0 to package.json files in both apps/dokploy and packages/server.
- Replaced js-yaml load function with toml parse function for configuration parsing in compose.ts and github.ts files, ensuring compatibility with TOML format.
- Updated pnpm-lock.yaml to reflect the new toml dependency.

packages/server/package.json

@@ -76,7 +76,8 @@
     "ws": "8.16.0",
     "zod": "^3.23.4",
     "ssh2": "1.15.0",
-    "@octokit/rest": "^20.0.2"
+    "@octokit/rest": "^20.0.2",
+    "toml": "3.0.0"
   },
   "devDependencies": {
     "@types/micromatch": "4.0.9",